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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_23065.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 318aa MW: 34842.8 Da PI: 6.7776 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.9 | 9.6e-29 | 253 | 303 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ Rsa1.0_23065.1_g00001.1 253 EKIIGLEVLQQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 303 7889*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.722 | 242 | 318 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.3E-25 | 256 | 303 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
PLALSWAPCD RQGKGGSRHS DENFSQCVST IDSACFVLDE ESKCFLEACS EYHLLQGEGM 60 VGKAFEETKL FFVPEVTIFS KTNYALAHHA KVSGLHAALA VPLKGKSNGL VEFVLEFFFP 120 KSCIDAEAKQ DMLKSLSVTL QQDFKSSNLV IDKDLELEVV LPDREDMVLL ETEESLREVH 180 MQDSSSMIKA NEKGKDPIDE SKISSGLDNS QLDPIPSGGC RVDAGPSTEP ASTGGGSMLG 240 SRRPGDKRRS KTEKIIGLEV LQQYFAGSLK DAAKSIGVCP TTLKRICRHH GITRWPSRKI 300 KKVGHSLKKL QVVMDSVQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_23065.1_g00001.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT000911 | 2e-90 | BT000911.1 Arabidopsis thaliana clone C105242 unknown protein (At2g17150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018492394.1 | 0.0 | PREDICTED: protein NLP1-like | ||||
Swissprot | Q8H111 | 1e-168 | NLP1_ARATH; Protein NLP1 | ||||
TrEMBL | M4CZL2 | 0.0 | M4CZL2_BRARP; Uncharacterized protein | ||||
STRING | Bra009659.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17150.1 | 1e-170 | Nin-like family protein |
Publications ? help Back to Top | |||
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