PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_22167.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 150aa MW: 17835 Da PI: 10.2184 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 105.9 | 2.1e-33 | 21 | 123 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk++ae++ +++++++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F Rsa1.0_22167.1_g00001.1 21 FDKVVTPSDVGKLNRLVIPKQHAERFfpldNSDNNKGLLLNFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 106 89****************************66677889************************************************ PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++d ++ +l++ ++r+ Rsa1.0_22167.1_g00001.1 107 QRDPGNKDKLFIDWRRR 123 *996677789****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-44 | 11 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-32 | 18 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.43E-26 | 19 | 112 | No hit | No description |
PROSITE profile | PS50863 | 14.692 | 21 | 124 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-30 | 21 | 123 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 21 | 124 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MNQEEEKPVE KASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERFFPLD NSDNNKGLLL 60 NFEDRTGNSW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFQRDP GNKDKLFIDW 120 RRRPKILDHH HQTAYQFSGA TFPCRQRRHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-67 | 16 | 126 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-67 | 16 | 126 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_22167.1_g00001.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172877 | 1e-154 | AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443583.1 | 1e-102 | PREDICTED: B3 domain-containing transcription factor NGA2-like | ||||
Swissprot | Q9M268 | 1e-85 | NGA2_ARATH; B3 domain-containing transcription factor NGA2 | ||||
TrEMBL | A0A1J3EP29 | 5e-91 | A0A1J3EP29_NOCCA; B3 domain-containing transcription factor NGA2 | ||||
TrEMBL | A0A1J3IP05 | 5e-91 | A0A1J3IP05_NOCCA; B3 domain-containing transcription factor NGA2 | ||||
STRING | Bo6g079210.1 | 8e-91 | (Brassica oleracea) | ||||
STRING | XP_006402424.1 | 2e-90 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 5e-88 | B3 family protein |
Publications ? help Back to Top | |||
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