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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_21520.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 121aa MW: 13690.6 Da PI: 10.8476 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 84 | 104 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H Rsa1.0_21520.1_g00001.1 84 CEVCNKGFQREQNLQLHRRGH 104 *******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.34E-5 | 80 | 105 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 81 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 82 | 104 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 3.7E-5 | 84 | 104 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MSSSYNKTIS SSSTQSFLLP SAATGAYNFE REETAMTMIQ QPNSVAPPAP PPKKRRNQPG 60 NSYPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH RRGHNLPWKL KQKSNKEVRR 120 K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_21520.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353183 | 1e-134 | AK353183.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018462460.1 | 2e-80 | PREDICTED: protein indeterminate-domain 6, chloroplastic-like | ||||
Swissprot | Q8RWX7 | 2e-58 | IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic | ||||
TrEMBL | A0A078IR80 | 4e-68 | A0A078IR80_BRANA; BnaA09g56990D protein | ||||
TrEMBL | E4MXD6 | 9e-68 | E4MXD6_EUTHA; mRNA, clone: RTFL01-38-E19 | ||||
TrEMBL | V4KCA7 | 9e-68 | V4KCA7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006416997.1 | 2e-68 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23423 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 9e-43 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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