PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_19534.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 66aa MW: 7274.63 Da PI: 10.4154 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.5 | 1.3e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien nr vtfskRrng+ KKA+E+ vLCda+va+i+f+s+gk+ +y+ Rsa1.0_19534.1_g00001.1 9 KRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIVFASNGKMTDYC 58 79**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.333 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.6E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-28 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.87E-35 | 2 | 63 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIVFAS NGKMTDYCCP 60 SMDLGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-18 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6byy_B | 4e-18 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6byy_C | 4e-18 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6byy_D | 4e-18 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_A | 5e-18 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_B | 5e-18 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_C | 5e-18 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_D | 5e-18 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms a heterodimer with APETALA3 that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP. AP3/PI prevents GATA22/GNL and GATA21/GNC expression (PubMed:18417639). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:8565821, ECO:0000269|PubMed:9489703}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_19534.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated by the meristem identity proteins APETALA1 and LEAFY with the cooperation of UFO. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:11283333, ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ402148 | 2e-99 | GQ402148.1 Brassica napus cultivar Yeongsan pistillata gene, promoter region and partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018511862.1 | 2e-41 | PREDICTED: floral homeotic protein PISTILLATA isoform X5 | ||||
Refseq | XP_018512771.1 | 1e-41 | PREDICTED: floral homeotic protein PISTILLATA isoform X2 | ||||
Refseq | XP_022551572.1 | 2e-41 | floral homeotic protein PISTILLATA isoform X4 | ||||
Refseq | XP_022553056.1 | 1e-41 | floral homeotic protein PISTILLATA isoform X1 | ||||
Refseq | XP_022566377.1 | 2e-41 | floral homeotic protein PISTILLATA-like isoform X5 | ||||
Refseq | XP_022567947.1 | 1e-41 | floral homeotic protein PISTILLATA isoform X2 | ||||
Refseq | XP_022567956.1 | 1e-41 | floral homeotic protein PISTILLATA isoform X2 | ||||
Swissprot | P48007 | 3e-39 | PIST_ARATH; Floral homeotic protein PISTILLATA | ||||
TrEMBL | A0A3N6PUD3 | 1e-40 | A0A3N6PUD3_BRACR; Uncharacterized protein | ||||
STRING | Bra002285.1-P | 5e-41 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-41 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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