PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_18670.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 27454.2 Da PI: 4.45 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.5e-19 | 3 | 56 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Rsa1.0_18670.1_g00001.1 3 KKRRLSVNQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 56 566899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.4 | 7e-42 | 2 | 94 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++++L Rsa1.0_18670.1_g00001.1 2 EKKRRLSVNQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNDSLL 89 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelke 93 +e+++ Rsa1.0_18670.1_g00001.1 90 QEISK 94 99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.718 | 1 | 58 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-17 | 1 | 62 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.7E-16 | 3 | 56 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.28E-15 | 3 | 59 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-18 | 3 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-20 | 5 | 65 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.8E-6 | 29 | 38 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 33 | 56 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.8E-6 | 38 | 54 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-17 | 58 | 99 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
AEKKRRLSVN QVKALEKNFE LENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL 60 EKDYGVLKTQ YDSLRHNFDS LRRDNDSLLQ EISKLKAKLN GEEEEDDEED NNLATMESDA 120 SVKEEEVSLP EKITEPPSSP PELLEHSDSF NYRSFTDLRD LLPLKAAASS VAAAGSSDSS 180 EGSSSNVTAA APVTVPGGSF VQFVKMEQTE DHDDFLSGEE ACGFFSDEQP PSLHWYSTVD 240 QWT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 58 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_18670.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY336103 | 0.0 | AY336103.1 Brassica napus homeodomain-leucine zipper protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018441266.1 | 1e-151 | PREDICTED: homeobox-leucine zipper protein ATHB-6 | ||||
Swissprot | P46668 | 1e-135 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A0D3DW12 | 1e-141 | A0A0D3DW12_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g101130.1 | 1e-141 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-110 | homeobox protein 6 |
Publications ? help Back to Top | |||
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