PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_17301.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 23067.5 Da PI: 11.1967 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 132 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+ +L++H H Rsa1.0_17301.1_g00001.1 132 FPCTACGEIFPKTNLLEHHVAIkH 155 89*****************98777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 24 | No hit | No description |
PROSITE profile | PS50157 | 9.12 | 132 | 160 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 134 | 155 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAARKLGSLL RQHFFSLFFL FLGCFFFPKG GDLRQKRRKK KKLRTVTSGS GLSSSWTYLK 60 RVFLSTTRIS KSRNQTHPNG PSTTLTSARS SQNSLVTLVQ PDPETRTENR FSDISSSDSP 120 LFLPLRNNNE IFPCTACGEI FPKTNLLEHH VAIKHAVSEL ADGESSTNIV KIIFKSGWLG 180 EQQGNNSKIP AIHRILKIHN SPKILA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | KRRKKKK |
2 | 36 | 42 | RRKKKKL |
3 | 37 | 43 | RKKKKLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_17301.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232577 | 0.0 | AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433029.1 | 1e-112 | PREDICTED: uncharacterized protein LOC108805604 | ||||
TrEMBL | A0A078I7S8 | 2e-98 | A0A078I7S8_BRANA; BnaA05g12370D protein (Fragment) | ||||
TrEMBL | A0A3P5YSP2 | 2e-98 | A0A3P5YSP2_BRACM; Uncharacterized protein | ||||
STRING | Bra018369.1-P | 4e-99 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7919 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-62 | C2H2 family protein |