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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_16243.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 23247.9 Da PI: 8.2498 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 97 | 117 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F+++ L H+ +H Rsa1.0_16243.1_g00001.1 97 CRECGKGFPSSKALCGHMASH 117 99*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.58E-7 | 5 | 36 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-6 | 6 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.157 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.5E-5 | 9 | 33 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 117 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-5 | 96 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.2E-4 | 97 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEQCNERRFV CKFCNKRFAC GKSLGGHIRT HMSNKNTADS DEDDEHNKLV IDENGGQSSY 60 GLRENPKKNK RFVDQREMMA LKHQQHQHQH QQRLLCCREC GKGFPSSKAL CGHMASHSER 120 EKIVMDSQSD TEASMSPTRR RSKRVVKHHH HHKDDGFVVG GSIMNQYDSA SSDESEIETE 180 QEQMALSLMM LSRDSSGFKK GHN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_16243.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437727.1 | 1e-148 | PREDICTED: uncharacterized protein LOC108810094 | ||||
TrEMBL | A0A397YJE8 | 1e-113 | A0A397YJE8_BRACM; Uncharacterized protein | ||||
STRING | Bo7g054120.1 | 1e-113 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1900 | 21 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 4e-85 | C2H2-like zinc finger protein |