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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_15221.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 243aa MW: 25972.1 Da PI: 8.4607 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 7.9e-31 | 105 | 163 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers +++v+++Y geH+h+k Rsa1.0_15221.1_g00001.1 105 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSP-GGQIVDTVYFGEHDHPK 163 58****************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.332 | 100 | 164 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.3E-27 | 101 | 164 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-25 | 101 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-34 | 105 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-24 | 106 | 162 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAEVGKVLVS GNSSEAKASD AVVASTDKIE AKPVATVTRT ETEQCPAEIP ESTDSKKLVP 60 ASVSEEEEVV VASDKATKAP ESGTVLSLQS GSEGSSSPFI REKVMEDGYN WRKYGQKLVK 120 GNEFVRSYYR CTHPNCKAKK QLERSPGGQI VDTVYFGEHD HPKPLGGAAA VPINQDRRSD 180 VLTAVSKEKS SGSSSVQTHQ PPKVHGGLHL SVVPMADEVK TAVSPSSRIT TPKDNISPAS 240 KRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-16 | 91 | 164 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-16 | 91 | 164 | 1 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_15221.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912389 | 0.0 | EU912389.1 Brassica napus WRKY1-1 transcription factor (WRKY1-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491223.1 | 1e-153 | PREDICTED: WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 1e-101 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | A0A398A3Y4 | 1e-133 | A0A398A3Y4_BRACM; Uncharacterized protein | ||||
STRING | Bra013187.1-P | 1e-133 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7949 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 3e-88 | zinc-dependent activator protein-1 |
Publications ? help Back to Top | |||
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