PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14752.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 330aa    MW: 36683.3 Da    PI: 8.7369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14752.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012527123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C+k F++  +L  Hir H
  Rsa1.0_14752.1_g00001.1  5 HVCKFCNKKFPSGKSLGGHIRIH 27
                             79*******************99 PP
2zf-C2H211.60.00087281303123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp C ++F++   L  H r+H
  Rsa1.0_14752.1_g00001.1 281 HECPVCFRVFKSGQALGGHKRSH 303
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-6230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.38E-8327No hitNo description
PfamPF139125.8E-6523IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.427532IPR007087Zinc finger, C2H2
SMARTSM003550.01527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576673.38E-8276303No hitNo description
PfamPF139123.8E-11280303IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995281303IPR007087Zinc finger, C2H2
SMARTSM003550.17281303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEKKHVCKFC NKKFPSGKSL GGHIRIHTNE YSVASVSFNA KNPRKNNKRL VDQREIEQQL  60
CCRGCGGSNH MDCHCVGVKM VMMDTRSDTE TTRSKKVMKQ SESFSSSSAS EIDQEHKDTA  120
LSLMMMSIDS KGRNLVVNSL AESSSENTSE ILETKASSGE QLKMIFNQDL KTDKLAADDQ  180
LRPPDDSYSS DSDYFMNGPK KSDSDVSVEG SLRNTNRLKN GDDLGVKEGR SKYELRKSKR  240
VLPCYDSDSC VDTDNKIHRS SDSKSPMVKK SSGANKSSKV HECPVCFRVF KSGQALGGHK  300
RSHFIGHKIK HKAAADMPID LNLPAQDIDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_14752.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894292e-32AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609662e-32HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437508.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A3P6EXW01e-161A0A3P6EXW0_BRAOL; Uncharacterized protein
STRINGBo7g054100.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-78C2H2-like zinc finger protein