PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_14440.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 116aa MW: 13421.8 Da PI: 9.8991 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.5 | 1.7e-09 | 84 | 110 | 4 | 30 |
XCHHHCHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeiee 30 ++r +r+ kNRe+A rsR+RK++++ Rsa1.0_14440.1_g00002.1 84 DRRHKRMTKNRESAVRSRARKQERVSP 110 799*********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57959 | 3.52E-5 | 85 | 109 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-5 | 85 | 109 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 88 | 103 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MEEVWKEINL ASLHQRRQLN IDHEPLNQEL PPLSSSTQHG SFLPPPATVL SLNPHSIDTH 60 FDESSRFGCS EKKRSQDSDE SRGDRRHKRM TKNRESAVRS RARKQERVSP YTSSPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_14440.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018452922.1 | 2e-72 | PREDICTED: bZIP transcription factor 27-like isoform X1 | ||||
Refseq | XP_018457112.1 | 2e-72 | PREDICTED: bZIP transcription factor 27-like isoform X1 | ||||
Swissprot | Q7PCC6 | 3e-34 | FDP_ARATH; bZIP transcription factor 27 | ||||
TrEMBL | M4F840 | 7e-60 | M4F840_BRARP; Uncharacterized protein | ||||
STRING | Bra037251.1-P | 1e-60 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.1 | 2e-40 | basic region/leucine zipper motif 27 |
Publications ? help Back to Top | |||
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