PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14252.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 143aa    MW: 15762.8 Da    PI: 8.1179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14252.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.61e-1586132151
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51 
                              +++kGVr ++ +g W AeI+dp     +   r +lg+f tae+Aa+a++ a+ 
  Rsa1.0_14252.1_g00002.1  86 KKHKGVRKRP-SGNWSAEIWDP-----SakVRRWLGTFPTAEMAAQAYDDAAA 132
                              589*******.7*********9.....445999*****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.82E-1786122No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2087134IPR001471AP2/ERF domain
PROSITE profilePS5103218.0787143IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1587137IPR016177DNA-binding domain
SMARTSM003801.5E-1887143IPR001471AP2/ERF domain
PfamPF008477.2E-987131IPR001471AP2/ERF domain
PRINTSPR003671.3E-68899IPR001471AP2/ERF domain
PRINTSPR003671.3E-6110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDYSGNNPID DQKPLYMTRD QEHVTMVSAL RQVISNVGSD MTSSSSNSNA CEALQTLDAG  60
PCPLCCITGC YGCAFPQHPE VKKDEKKHKG VRKRPSGNWS AEIWDPSAKV RRWLGTFPTA  120
EMAAQAYDDA AAVLVERIGR KKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_14252.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450170.11e-102PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC97e-55EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A397L4F07e-63A0A397L4F0_BRACM; Uncharacterized protein
TrEMBLA0A3P6A8C99e-63A0A3P6A8C9_BRACM; Uncharacterized protein
TrEMBLM4DRE49e-63M4DRE4_BRARP; Uncharacterized protein
STRINGBra019087.1-P2e-63(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.15e-47ERF family protein