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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_14168.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | BES1 | ||||||||
Protein Properties | Length: 283aa MW: 30699.4 Da PI: 9.7434 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 210.6 | 4.1e-65 | 16 | 154 | 1 | 146 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 g++gr+ptwkErEnnk+RERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DGttyrkgs+p+ s Rsa1.0_14168.1_g00001.1 16 GATGRMPTWKERENNKKRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCFEAGWIVHEDGTTYRKGSRPT-----ETSPP 96 589*************************************************************************.....66778 PP DUF822 87 saspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslv 146 ++s +ss+q+s++ssa++sp++sy++sp+sss+psp+++d ++++ + l+p+l++l+++ Rsa1.0_14168.1_g00001.1 97 RVSACSSIQLSPHSSAFQSPIPSYQTSPASSSYPSPTRFDPNQSS--TYLIPYLQNLAYS 154 99****************************************776..9******999874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.8E-60 | 18 | 151 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MTASGGGGST AAGGAGATGR MPTWKERENN KKRERRRRAI AAKIFTGLRS QGNYKLPKHC 60 DNNEVLKALC FEAGWIVHED GTTYRKGSRP TETSPPRVSA CSSIQLSPHS SAFQSPIPSY 120 QTSPASSSYP SPTRFDPNQS STYLIPYLQN LAYSGNLAPL RISNSAPVTP PVSSPRGSSH 180 PRLPRPQISN FPVSAPSSPT RRLHHHYTSI PECDESDVSL VDSCRWTRFQ PVTVSQTCPP 240 SPTFNLVKNS VCVGGGDVSV KPWEGEKIHD VGVDDLELTL GKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-24 | 20 | 103 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-24 | 20 | 103 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-24 | 20 | 103 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-24 | 20 | 103 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_14168.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189189 | 0.0 | AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477177.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: BES1/BZR1 homolog protein 1-like | ||||
Swissprot | Q9S7F3 | 1e-138 | BEH1_ARATH; BES1/BZR1 homolog protein 1 | ||||
TrEMBL | A0A3P6E5Z4 | 1e-162 | A0A3P6E5Z4_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g099470.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14467 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50750.1 | 1e-133 | BES1/BZR1 homolog 1 |