PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_12829.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 273aa MW: 29939.7 Da PI: 9.6792 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.3 | 3.1e-12 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT E++++++a +++ + Wk+I + +g +t q++s+ qky Rsa1.0_12829.1_g00001.1 61 RESWTDPEHDKFLEALHLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 105 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.68E-16 | 55 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.499 | 56 | 110 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-17 | 59 | 108 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.3E-6 | 59 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-9 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-10 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-7 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MVSRNMNPAD GSFLDPKGTM AVPAIGPFST SSSPTTAVDA TTSEEDLSKK IRKPYTITKS 60 RESWTDPEHD KFLEALHLFD RDWKKIEAFI GSKTVIQIRS HAQKYFLKVQ KSGTGEHLPP 120 PRPKRKAAHP YPQKAHKNVQ PQVPWSFTST AEPNDPSYMF IPESSSMLMT SPPTAAAAAA 180 APWTNNVPTI SFTPLPKETA GAGANNNCSS SSENTPRPRS NKDTSVQGNL GHSLRVLPDF 240 GQVYSFIGSV FDPYASNHLQ KLKKMDPIDV DTV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_12829.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018456301.1 | 0.0 | PREDICTED: protein REVEILLE 6-like isoform X1 | ||||
Refseq | XP_018456304.1 | 0.0 | PREDICTED: protein REVEILLE 6-like isoform X4 | ||||
Swissprot | Q8H0W3 | 1e-144 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A078IS80 | 1e-149 | A0A078IS80_BRANA; BnaA10g28420D protein | ||||
TrEMBL | A0A397XKH6 | 1e-149 | A0A397XKH6_BRACM; Uncharacterized protein | ||||
STRING | Bra003117.1-P | 1e-149 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 1e-128 | MYB_related family protein |
Publications ? help Back to Top | |||
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