PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10038.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 300aa    MW: 34079.1 Da    PI: 8.2991
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10038.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3410.91.5e-125412921257
                              XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                              e+l++rmwkd+++lkr+ker+k   e++++ t++++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g
  Rsa1.0_10038.1_g00001.1  41 EDLERRMWKDRVRLKRIKERTKT--EEASQ-TKESQPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSG 123
                              89*******************98..44555.889999************************************************* PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS
                     EIN3  87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172
                              +sd++raWWkekv+fd+ngpaai+ky+ ++l++ g+s+    +++++  l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPW
  Rsa1.0_10038.1_g00001.1 124 SSDNIRAWWKEKVRFDKNGPAAIAKYEEECLLAFGKSDG---SRNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGMPPPW 206
                              ******************************999999888...789999************************************** PP

                              ---S--HHHH.HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS
                     EIN3 173 WPtGkelwwg.elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekec 257
                              WP+G+e+ww  +lgl k q++ppykkphdlkk+wkv+vLtavi+hm p++++i++++rqsk+lqdkm+akes+++l+vlnqee+e 
  Rsa1.0_10038.1_g00001.1 207 WPSGDEEWWVkKLGLGKGQSPPPYKKPHDLKKMWKVGVLTAVINHMLPDVAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEEEES 292
                              ********972578*********************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.4E-12741289No hitNo description
Gene3DG3DSA:1.10.3180.102.5E-68163292IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.88E-57168290IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGGGDLIMSV ADIRMENEPD DLASDNVVAE IDVSDEEIDA EDLERRMWKD RVRLKRIKER  60
TKTEEASQTK ESQPKKISDQ AQRKKMSRAQ DGILKYMLKL MEVCKVRGFV YGIIPEKGKP  120
VSGSSDNIRA WWKEKVRFDK NGPAAIAKYE EECLLAFGKS DGSRNSQFVL QDLQDATLGS  180
LLSSLMQHCD PPQRKYPLEK GMPPPWWPSG DEEWWVKKLG LGKGQSPPPY KKPHDLKKMW  240
KVGVLTAVIN HMLPDVAKIK RHVRQSKCLQ DKMTAKESAI WLAVLNQEEE ESLSDNGASN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A9e-781672899129ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_10038.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445748.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A0D3CWU20.0A0A0D3CWU2_BRAOL; Uncharacterized protein
STRINGBo6g087550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]