PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09919.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 409aa    MW: 46572.6 Da    PI: 9.6487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09919.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.1e-143253991794
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                              ++p kfa++++ +   s+ + l+ ++g +W+v l  rk ++  +++++GW+eFv+   ++ g  +vF+++g+s f+ ++
  Rsa1.0_09919.1_g00001.1 325 RVPDKFASKFKDE--LSVAVALTVPDGHVWRVGL--RKADNNkIWFQDGWQEFVDRYSIRIGYLLVFRYEGNSAFSVYI 399
                              58*****999755..99*****************..66655559***************************99995544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd016502.90E-4325235No hitNo description
SuperFamilySSF566724.0E-1626231No hitNo description
PfamPF000783.3E-3732231IPR000477Reverse transcriptase domain
Gene3DG3DSA:2.40.330.102.0E-19275293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.098309403IPR003340B3 DNA binding domain
SMARTSM010191.9E-12315403IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-17317402IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-19325402IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-11325399IPR003340B3 DNA binding domain
CDDcd100172.45E-15325401No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MLGGDICREI RNFFISGQMD RRMNETHVCL IPKITAPQKP SDYRPIALCN VRYKIIAKII  60
TLRLQPLLQH LISPYQSAFV PKRAISDNVL ITHETLHFLK QSEATKRCSM AVKTDMSKAY  120
DRIEWGFLLA VLKRLGLGPV IVNWLMECVT SVSYSFLING SPHGLLIPGR GLRQGDPLSP  180
YLFILCTEVL SGLCARAQRL GSLKGIQISR RSPFVNHLLF ADDTMFFCRT NLKGLLSPVS  240
VGYSPASFHD LTLVSSSPPL FFLFFLLLGL LLNMPRPFFH KLIFSSTIQE KRLNQIDAHF  300
RGGKKVEICL CLLCFDSLLS LTHERVPDKF ASKFKDELSV AVALTVPDGH VWRVGLRKAD  360
NNKIWFQDGW QEFVDRYSIR IGYLLVFRYE GNSAFSVYIY NLSHSEINY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09919.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325621e-95AC232562.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH054E04, complete sequence.
GenBankAY3563681e-95AY356368.1 Brassica rapa cultivar Samjin reduced vernalization response 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650862.11e-108uncharacterized protein LOC106355464
RefseqXP_019085342.11e-109PREDICTED: uncharacterized protein LOC104748447
TrEMBLQ9SZ871e-103Q9SZ87_ARATH; RNA-directed DNA polymerase-like protein
STRINGXP_010468391.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-61B3 family protein