PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09897.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 654aa    MW: 74169.4 Da    PI: 6.8086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09897.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07444486146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +g WT+e+ el v+  k+ G++ W+t a  mg  + ++++k+ w+ 
  Rsa1.0_09897.1_g00004.1 444 KGVWTKEDLELVVQHQKKRGND-WRTLADAMG--KHRNHVKDAWRR 486
                              799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.026370441IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-4370426IPR009057Homeodomain-like
PROSITE profilePS500904.054373426IPR017877Myb-like domain
PROSITE profilePS500906.876439488IPR017877Myb-like domain
SMARTSM007170.57443490IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-7444505IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-5444486IPR009057Homeodomain-like
PfamPF139213.3E-9447505No hitNo description
PROSITE profilePS500906.644489557IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-4493557IPR009057Homeodomain-like
SMARTSM0071750493559IPR001005SANT/Myb domain
SuperFamilySSF466896.53E-5537615IPR009057Homeodomain-like
PROSITE profilePS500907.015559612IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MVMSANFFKL DSLESDTDEE RTTTTASKVA VPSQGTPAER SSVKKKTKKK KPSVEKPDSE  60
GGKKSKTKVS GGDELGGDTE SSQGHEKAVA NTDADDDGKR KRKRVDDTDL GDTSPNPKTT  120
KKKKKQTVAD SENTSSSKKK SKDKIQRDVP EEAQVNQLQT EDPEKSPKKK KKQTEDPEVE  180
EDNKDSAEDA EKKQSEDSEA DDLNKSSKKK RKKKLIDAPE VGEDDAEKTQ SEDSEANLNK  240
STKVPKKKKK KKKLSEAPEV EDSSGDAEKE NSEAEGNYLN SPEIAKKKSK KKKKKQSEDP  300
EAEENNNNNG KDKKKKKKKK QKGSKSDEVV TTPSPKSAKK VNFSDQVEVF PADSEESDEE  360
EGEEKVDLVR GKRFTKEEDE LIKKSVLEYV ENHALGDEGI NMVMNCKAHK QIKGCWKEIA  420
TALPWRPYLG VYYRAHTLFE EGSKGVWTKE DLELVVQHQK KRGNDWRTLA DAMGKHRNHV  480
KDAWRRIRLA SKKKGHWSME EYQSLFDLVN RDLRIKAFKE KHSKHGMLRD NIPWMAISDQ  540
LGTRDHAVCC LKWYDQLTSP MVADGMWANV DDYRLLDELT NLDAACVDDV DWDNLLDNRD  600
GDACRSRWNQ MVNHIGLPGS KTFAEQVEVL SQRYCPDIAE DREDFDNRPF DPED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101123RKRVDDTDLGDTSPNPKTTKKKK
2208212KKRKK
3286294KKSKKKKKK
4313319KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09897.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484875.10.0PREDICTED: RNA polymerase I termination factor
TrEMBLA0A3P6CC720.0A0A3P6CC72_BRAOL; Uncharacterized protein
STRINGBo4g140750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-176MYB_related family protein