PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09304.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 280aa    MW: 32134.7 Da    PI: 9.8906
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09304.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.5e-10163262182
                              EEEE-..-HHHHT.T-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHH CS
                       B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeF 68 
                              f+k+l   dv  s +rl++p + + ++               ++ ++ +   +l d+  ++W v l+ +   g+  y l  GW++ 
  Rsa1.0_09304.1_g00001.1 163 FEKTLFETDVKPSqSRLSIPFHKLIRNdfltpaesrvieediSNREKMGLGAVLVDQGTKKWGVFLKRWEMNGSwnYALVCGWSDV 248
                              77888888887665888888888888888888877777776633444555689999999*******6644444448********** PP

                              HHHHT--TT-EEEE CS
                       B3  69 vkangLkegDfvvF 82 
                              vkangLk+gD++ +
  Rsa1.0_09304.1_g00001.1 249 VKANGLKDGDSISL 262
                              **********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037541.2E-45141250IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.3E-20154277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-19158276IPR015300DNA-binding pseudobarrel domain
CDDcd100174.34E-13162273No hitNo description
PROSITE profilePS5086311.773183279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MNTYYDDLTT WSNFSLLVDI AALLHEQERK QTSRKEEEDE QRMKRIFDLF QRKPRSSVKK  60
PLQNPNGASY SHLFDLNKIP SDTNTLVKNP QNPSSLSSSS SSCLTENDTS SRKRRAVQER  120
GKRSFKKAKV SPLLFTWEGK DTPDWMLQLM RSTKGAQDPM LIFEKTLFET DVKPSQSRLS  180
IPFHKLIRND FLTPAESRVI EEDISNREKM GLGAVLVDQG TKKWGVFLKR WEMNGSWNYA  240
LVCGWSDVVK ANGLKDGDSI SLWSFRCRGV LCFALVPLPM
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09304.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453936.10.0PREDICTED: B3 domain-containing protein At3g25182-like
RefseqXP_018453938.10.0PREDICTED: B3 domain-containing protein At3g25182-like
SwissprotQ9LSF73e-89Y3518_ARATH; B3 domain-containing protein At3g25182
TrEMBLA0A3N6RWU81e-168A0A3N6RWU8_BRACR; Uncharacterized protein
STRINGBo9g044130.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.13e-45B3 family protein