PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_09279.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 166aa MW: 19232.3 Da PI: 7.9363 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.6 | 1.2e-14 | 3 | 54 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h e+Er+RR+++ s ++ Lr+llP ++ ++K s ++ + +Av+YI++L+ Rsa1.0_09279.1_g00001.1 3 KMMHREIERQRRQEMASLYASLRSLLPLNF--IQGKRSTSDQVGEAVNYIRYLE 54 789*************************75..********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.259 | 1 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-11 | 3 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-14 | 3 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.87E-9 | 3 | 58 | No hit | No description |
Pfam | PF00010 | 1.3E-11 | 3 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-7 | 7 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEKMMHREIE RQRRQEMASL YASLRSLLPL NFIQGKRSTS DQVGEAVNYI RYLERKIKEL 60 SLRRDELMLL SRGTLLDDSK NEMEAINHVV VRQCLVGVEI VFSSRCCRGQ PQLSSVLQVL 120 SENGLCLRNT ISSIVDDRLI YTIQAEVKDS TLIDLSELEE RLTRMK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_09279.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127274.1 | 1e-103 | PREDICTED: transcription factor bHLH36-like | ||||
Refseq | XP_013674763.1 | 1e-103 | transcription factor bHLH36-like | ||||
Refseq | XP_013710558.1 | 1e-103 | transcription factor bHLH36-like | ||||
Swissprot | Q9FLI1 | 5e-88 | BH036_ARATH; Transcription factor bHLH36 | ||||
TrEMBL | A0A078IC52 | 1e-102 | A0A078IC52_BRANA; BnaAnng08070D protein | ||||
TrEMBL | A0A398ACQ4 | 1e-102 | A0A398ACQ4_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6A1T7 | 1e-102 | A0A3P6A1T7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E1B4 | 1e-102 | M4E1B4_BRARP; Uncharacterized protein | ||||
STRING | Bra022562.1-P | 1e-103 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 2e-90 | bHLH family protein |