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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_09276.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 276aa MW: 31833.5 Da PI: 7.9091 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_09276.1_g00002.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 148 | 4.7e-46 | 8 | 134 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
pGfrFhPt+eel+++yLk+ v ++ +++ evi ++iy+++PwdLp+ + +e+ewyfF++r++k+ +g r++r+t++gyWkatg+
Rsa1.0_09276.1_g00002.1 8 PGFRFHPTEEELLNYYLKNMVYENITKV-EVIGFLNIYRHDPWDLPHLSTIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGS 92
9*********************999999.99***************7777799********************************* PP
NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
d++++s ++ +glkktLvfy+grap g ktdWvm+e+r+
Rsa1.0_09276.1_g00002.1 93 DRKIISLsePKRMIGLKKTLVFYRGRAPGGCKTDWVMNEFRM 134
****997556777***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MSKEIELPGF RFHPTEEELL NYYLKNMVYE NITKVEVIGF LNIYRHDPWD LPHLSTIGER 60
EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRMIGLKK TLVFYRGRAP 120
GGCKTDWVMN EFRMPDNCTL PKDVVLCKVY RKATSIKVLE QRAEMGAKMN HACPSSPLSS 180
SDTISFVGKE EDMMMTSFPF PHQEANNNFM PQGHTEEKQR ETEMKEPSSS LKLPCGVSPL 240
PELQVPQQGF EWGQDQLLSI SPWLQNLTPI VNLLNF
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-43 | 8 | 157 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-43 | 8 | 157 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-43 | 8 | 157 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-43 | 8 | 157 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-43 | 8 | 157 | 22 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 2e-43 | 8 | 157 | 22 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 2e-43 | 8 | 157 | 22 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 2e-43 | 8 | 157 | 22 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 2e-43 | 8 | 157 | 22 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 2e-43 | 8 | 157 | 22 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 2e-43 | 8 | 157 | 22 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 2e-43 | 8 | 157 | 22 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 2e-43 | 8 | 157 | 19 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 2e-43 | 8 | 157 | 19 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353307 | 0.0 | AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17. |
