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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_09068.1_g00001.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
AP2 |
Protein Properties |
Length: 419aa MW: 46745 Da PI: 6.7037 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_09068.1_g00001.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 34 | 7.1e-11 | 151 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k++g
Rsa1.0_09068.1_g00001.1 151 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 207
57*******************4444.2344336655.7799999*************98 PP
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2 | AP2 | 50.3 | 6.1e-16 | 250 | 301 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
Rsa1.0_09068.1_g00001.1 250 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 301
57****************988532...5************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 419 aa
Download sequence Send
to blast |
LKEEAQTSMS DSTALASLFD PPQTHSPKLE DFLGDSSSTQ QQQDSSSSLA QIYDPRLHAG 60 ATAGFASSGD DHHQQNFEEM VVEAGAASEE GCTKEGALSL AVINTDLRCD NGGEIVENSN 120 KKVVVETSTD DVDSKKKKKK KVVETFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA 180 RKGRQGGYDK EDKAARAYDL AALKYWGPAA TTNFQIASYS KELEEMNHMT KQEFIASIRR 240 KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE AYDIAAIKFR 300 GINAVTNFEM NRYDVEAIMK SCFPVGGTAV KRHKQQLSLE SPPPPPCDDR NNQQRLLLPS 360 PSSTSPELDP NSIPCGIPFE SSVLYHHHQS FLQYYPAVPD PTMVQVPMMN QADQFLMWY
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |