PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_09040.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 166aa MW: 19457.1 Da PI: 9.7764 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 79 | 5.9e-25 | 3 | 53 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++ Y+eC++NhAa+lG++avDGC+E+ + a++ CaACgCHR++HRr + Rsa1.0_09040.1_g00001.1 3 SSCLYRECMRNHAAKLGSYAVDGCREYSQP------ATGDLCAACGCHRSYHRRIDV 53 5789***********************998......57789*************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-20 | 4 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.3E-17 | 6 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.911 | 7 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.5E-16 | 7 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-16 | 90 | 163 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.82E-8 | 96 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.4E-29 | 105 | 163 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MQSSCLYREC MRNHAAKLGS YAVDGCREYS QPATGDLCAA CGCHRSYHRR IDVQPSGQVT 60 RARFPFTSLR RVKQLARLKW KAAAEEIEEE DTEETSTEEK MTVNRRRKSK FTAEQREAMR 120 DYAAKLGWTL KDKRAVREEI SVFCERIGVT RYLFKTWVNN NKKFYH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 109 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00143 | DAP | Transfer from AT1G14687 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_09040.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006917 | 1e-145 | AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence. | |||
GenBank | AY086523 | 1e-145 | AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence. | |||
GenBank | BT003942 | 1e-145 | BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds. | |||
GenBank | BT005027 | 1e-145 | BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-145 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437252.1 | 1e-107 | PREDICTED: zinc-finger homeodomain protein 14 | ||||
Swissprot | Q9LQW3 | 3e-93 | ZHD14_ARATH; Zinc-finger homeodomain protein 14 | ||||
TrEMBL | A0A078H8D4 | 1e-102 | A0A078H8D4_BRANA; BnaA09g45550D protein | ||||
TrEMBL | A0A397Y4H3 | 1e-102 | A0A397Y4H3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EDF2 | 1e-102 | M4EDF2_BRARP; Uncharacterized protein | ||||
STRING | Bra026812.1-P | 1e-103 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13728 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14687.1 | 1e-93 | homeobox protein 32 |