PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_08870.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 168aa MW: 19037.1 Da PI: 9.1935 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.1 | 4.4e-15 | 8 | 52 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr ++P+ +K++Ka+iL+ A+ YI+ Lq Rsa1.0_08870.1_g00002.1 8 IVLERNRRQKLNQRLFALRAVVPNI-----TKMDKASILKDAISYIQGLQ 52 568*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.412 | 2 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.63E-12 | 5 | 52 | No hit | No description |
SuperFamily | SSF47459 | 1.01E-17 | 5 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-18 | 8 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-15 | 8 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-12 | 8 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
TSPASKNIVL ERNRRQKLNQ RLFALRAVVP NITKMDKASI LKDAISYIQG LQYEETKLEA 60 EIRELESTPK SSLSFGKDFD RDLLVPVTSK RMKQLDSGSS RSLIEVLELK VTFMGERTMV 120 VNVTCDKRTD TMVKLCEVLE SLNLIIITSN LNSFSGMIFN TLFIEVSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-15 | 7 | 61 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-15 | 7 | 61 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-15 | 7 | 61 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-15 | 7 | 61 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-15 | 7 | 61 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-15 | 7 | 61 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-15 | 7 | 61 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-15 | 7 | 61 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_08870.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY136380 | 0.0 | AY136380.1 Arabidopsis thaliana putative protein (At5g57140) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018460883.1 | 1e-117 | PREDICTED: transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 1e-104 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A398A1N1 | 1e-111 | A0A398A1N1_BRACM; Uncharacterized protein | ||||
STRING | Bra006831.1-P | 1e-110 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6367 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 1e-108 | bHLH family protein |