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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_08704.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 321aa MW: 35642.3 Da PI: 7.5028 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.2 | 1.3e-33 | 60 | 178 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl++ak++i+el+ ++ s+++++ ++++s + +++ Rsa1.0_08704.1_g00002.1 60 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGLDQPSKAVDWLLNAAKEEIDELPPLPVSPETFSlfNHHQSFLNLGQQ 145 689*************************************************************9999988877666666666654 PP TCP 86 ssg...............kaaksaakskksqksa 104 + + ++ +++++++ +++ Rsa1.0_08704.1_g00002.1 146 PGQdptqlgfkvngcaeeS-SSREENNNERGEKD 178 4445677777777666422.22222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-29 | 62 | 178 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.748 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MNTGPWKDTN DDVSGQTRTR HEEAVVAVAT TKRPASISSS SSSSWMKSKD PRIVRVSRAF 60 GGKDRHSKVC TLRGLRDRRV RLSVPTAIQL YDLQERLGLD QPSKAVDWLL NAAKEEIDEL 120 PPLPVSPETF SLFNHHQSFL NLGQQPGQDP TQLGFKVNGC AEESSSREEN NNERGEKDVT 180 FRNNHHIGSY GVYDNMEHHH EQHSSFQADY HHQLHSLVPF PSQILVCPMT TLSNTTTTTA 240 TQSLFPSSSS AGSWTMETTE PRRMVSHFQM PLMGSSSSSA SQNISTLYSL LHGSSSRNNG 300 SSNRMSSVQL NQTSRGSDNP M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_08704.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491351.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Swissprot | Q9S7W5 | 1e-156 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | A0A0D3B9D0 | 0.0 | A0A0D3B9D0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A398A2Q5 | 0.0 | A0A398A2Q5_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3N6RJD9 | 0.0 | A0A3N6RJD9_BRACR; Uncharacterized protein | ||||
STRING | Bo3g055460.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 1e-138 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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