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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_08643.1_g00001.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
C3H |
| Protein Properties |
Length: 236aa MW: 26610.8 Da PI: 6.8281 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_08643.1_g00001.1 | genome | RGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 38.1 | 2.6e-12 | 40 | 65 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C+ff+rtG+C yG++C+F+H+
Rsa1.0_08643.1_g00001.1 40 PGERDCQFFLRTGQCGYGNSCRFNHP 65
5789*********************9 PP
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| 2 | zf-CCCH | 40 | 6.6e-13 | 86 | 110 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C +f++tG CkyG++CkF+H++
Rsa1.0_08643.1_g00001.1 86 EPDCEYFLKTGACKYGSTCKFHHPK 110
789********************96 PP
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| 3 | zf-CCCH | 29.5 | 1.2e-09 | 131 | 154 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++ C+++ +tG C++G CkF+H+
Rsa1.0_08643.1_g00001.1 131 EKSCPYYVQTGMCRFGVACKFHHP 154
667********************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.868 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-6 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.2E-10 | 41 | 65 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-6 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 45 | 64 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.5E-6 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.624 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.6E-10 | 86 | 110 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-6 | 88 | 111 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 89 | 109 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.75E-6 | 127 | 156 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.479 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.6E-4 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.3E-6 | 130 | 154 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 133 | 153 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MSSETQNSTG SVRSSDKIEE DTLKVNEENM EQTSPYPDRP GERDCQFFLR TGQCGYGNSC 60
RFNHPLTHLP QAVLYHRDEL PERIGEPDCE YFLKTGACKY GSTCKFHHPK DRNGAEPVLF 120
NVLGYPMRQG EKSCPYYVQT GMCRFGVACK FHHPHPQPHN NNGHSTTYGM PTFPYGMMSL 180
PPATYGVMPP PQVPYPQTYM PFIFAPPQGW SPYMAGSNSI YNGKTQPDSS SERAEC
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