PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08518.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 187aa    MW: 21090.8 Da    PI: 10.0851
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08518.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-051941123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C + F++   L  H+++H
  Rsa1.0_08518.1_g00001.1 19 YTCSFCRREFRSAQALGGHMNVH 41
                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.91E-71645No hitNo description
Gene3DG3DSA:3.30.160.607.3E-41744IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-51942IPR007087Zinc finger, C2H2
SMARTSM003550.00611941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2191946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MNHYKNYEAG LIPWPPKNYT CSFCRREFRS AQALGGHMNV HRRDRAKLRQ IPSWLFEPHH  60
HTPVPNPNPS LNSSSSSSSS SSITLAHHEP SLINQISKTT PFSPTRFDVL DYTTSYGGLM  120
VEKEKNNSSV CNRDRRNSAI DSSRAAKCEI SRGDLMNKKD GVVGLELGMS LRNPKQVLDL  180
ELRLGRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-131441229superman protein
2l1o_A4e-131441229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08518.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142836.11e-104PREDICTED: transcriptional regulator SUPERMAN
SwissprotQ9SLB81e-101ZFP11_ARATH; Zinc finger protein 11
TrEMBLA0A3P5YPF91e-103A0A3P5YPF9_BRACM; Uncharacterized protein
STRINGBra004692.1-P1e-103(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.17e-90zinc finger protein 11