PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07901.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 318aa MW: 35370.2 Da PI: 9.1328

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07901.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.3	6.9e-25	63	152	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g++++++ +++ ++r+ +tgCka l++k+++d++w+v+++++eHnH Rsa1.0_07901.1_g00001.1 63 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTTTKRDPSAVVIINPRSCPKTGCKAGLHMKRKEDERWVVNSFVKEHNH 148 9*******************************************9************************************* PP FAR1 88 elap 91 e++p Rsa1.0_07901.1_g00001.1 149 EICP 152 *996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-22	63	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-18	232	318	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDVGGVVAID LLSTSGGNVD ESCDASTSGN AATTRSSTLE HFVTVGEPRN GMEFESKEAA 60 YYFYREYARS VGFGITIKAS RRSKRSGKFI DVKIACSRFG TTTKRDPSAV VIINPRSCPK 120 TGCKAGLHMK RKEDERWVVN SFVKEHNHEI CPDDFYASVR GKKNKPGGAK KGLQLALGEE 180 AIKLMLEHFA EMQDKQPGFF YAVDLDAEKK RVRNVFWLDV KGKQEYCSFS DVVLFDTFYV 240 RSGGYRIPFA PFVGVNRHRR YALLGCALIG EESESTYTWL FRTWVKAVGG GQAPGVMITD 300 QDRVLSDVVA QVLPSARH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07901.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018441037.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441038.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441039.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441040.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441041.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X2
Swissprot	Q3EBQ3	1e-155	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A3P5ZCB7	0.0	A0A3P5ZCB7_BRACM; Uncharacterized protein
STRING	Bo2g100260.1	1e-178	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	1e-135	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]