PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07698.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 334aa    MW: 37849.4 Da    PI: 6.5073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07698.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.7e-53211501129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL++kv +  l    +i+evd++++ePw+Lp+++k +e+ewyf+s rd+ky+tg r+nrat++gyWkat
  Rsa1.0_07698.1_g00001.1  21 LPPGFRFHPTDEELITFYLAAKVFHGGLCG-IHIAEVDLNRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKAT 105
                              79*************************877.78***************9889999******************************* PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkdkevls   +g+lvg+kktLvfykgrap+g kt+Wvmheyrle
  Rsa1.0_07698.1_g00001.1 106 GKDKEVLSGggGGALVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 150
                              ********9878889****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6217171IPR003441NAC domain
PROSITE profilePS5100558.6321171IPR003441NAC domain
PfamPF023656.6E-2722149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MLAVEDVLNE LAGEERNDRG LPPGFRFHPT DEELITFYLA AKVFHGGLCG IHIAEVDLNR  60
CEPWELPEMA KMGEREWYFY SLRDRKYPTG LRTNRATTAG YWKATGKDKE VLSGGGGGAL  120
VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE TDLSHRHTCK EEWVICRVFN KTGDRKNVGI  180
HNQISFLHNT SLSTTHQHHN HDLYHHLEIL PPLLEPSKTQ TNFPSLLYDD THQNYHNNLL  240
HGSSAHNVDG FKALISPAVS QLNGVIFSQE NSYYNNEEDN NFGVKTEQYS NGGNNDLDVR  300
DYLDNPFCPE AGYGLLGLSS SPGPLMLLDS PYVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-492117415171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07698.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ7039690.0HQ703969.1 Raphanus sativus CUP-SHAPED COTYLEDON 3 (CUC3) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444483.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8511e-180NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A397YS590.0A0A397YS59_BRACM; Uncharacterized protein
TrEMBLF5B9T60.0F5B9T6_RAPSA; CUP-SHAPED COTYLEDON 3 (Fragment)
TrEMBLM4DGX40.0M4DGX4_BRARP; Uncharacterized protein
STRINGBra015750.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-163NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]