PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07413.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 274aa MW: 30376.7 Da PI: 5.8506

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07413.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	222	258	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a++L +Av+Y+ksL Rsa1.0_07413.1_g00001.1 222 RRKMKKMMGVLRRIVPGG-----EEMNTASVLDEAVQYLKSL 258 899***********95.....69*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.785	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.007	216	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.06E-5	222	263	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-6	222	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.03E-7	222	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MCIVGNKKGN NRSLKEIGTF MMTTCFIANY QSVQVCQAEY FRQLLKPHGG HSLMQNNQYP 60 YFSDEMGDGN MNNVPSYATA SSFDALFPPC AKLPFHGVEL QPSAVCPKNF VVFHQTYDHR 120 SSQVMYHPEL TPRLVNSGLA STFQNEYVGQ QEEEVSSSSS HQEDPSEIDA LLSTDEDFED 180 DGDSEEVSST ARNSSYGYNN SSRRKQGLSG SASSCNNDGK GRRKMKKMMG VLRRIVPGGE 240 EMNTASVLDE AVQYLKSLKL EAQKLGVGHF SNQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	225	RRKQGLSGSASSCNNDGKGRRKMK
2	220	228	GRRKMKKMM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07413.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC008030	6e-72	AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence.
GenBank	AC022455	6e-72	AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBank	AF361607	6e-72	AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	AK230374	6e-72	AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05.
GenBank	AK318702	6e-72	AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13.
GenBank	AY074843	6e-72	AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	CP002684	6e-72	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593013.1	1e-119	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	4e-87	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A0D3D5V8	1e-153	A0A0D3D5V8_BRAOL; Uncharacterized protein
STRING	Bo7g044860.1	1e-154	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	9e-70	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]