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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_07334.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
ERF |
| Protein Properties |
Length: 231aa MW: 25934.8 Da PI: 5.3337 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_07334.1_g00003.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 55.7 | 1.3e-17 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y GVr+++ +gr++AeIr + + r++lg+f+taeeAa a++ a++++ g
Rsa1.0_07334.1_g00003.1 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAALAYDVAARSISG 69
799******.**********66.....34**********************99876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MLKSRNKSKS KQEKKSEEVK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAALAY 60
DVAARSISGS LAKTNFFYTD NISLQTQPQD SSSDKALFVN PVASLKPNMS LGSSSFCFLQ 120
ENNHFVAGPV SSYIQEQQLS ANLTNSFSHC YDDDHHHVGK SKEISLPSLP NDMSSSLFGR 180
QDKTEEDGDA DKMNLGSVLT DEAHCFEYDF LLSGMPLSLL SDYNEDLPQI I
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493454 | 1e-94 | AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890. |
| GenBank | CP002684 | 1e-94 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | F13K23 | 1e-94 | AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence. |
