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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_07148.1_g00005.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
C3H |
| Protein Properties |
Length: 350aa MW: 38939.8 Da PI: 7.0351 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_07148.1_g00005.1 | genome | RGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 23 | 1.4e-07 | 74 | 99 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+ C f G C+ G+ C+FaHg+
Rsa1.0_07148.1_g00005.1 74 YKTRMCVKFKS-GACRNGELCNFAHGM 99
89999**9999.*************95 PP
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| 2 | zf-CCCH | 18.7 | 3.1e-06 | 162 | 176 | 11 | 25 |
GTS.--TTTTT-SS-S CS
zf-CCCH 11 rtG.tCkyGdrCkFaH 25
G +C+yGdrC+F+H
Rsa1.0_07148.1_g00005.1 162 F-GeECPYGDRCNFIH 176
5.449*********** PP
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| 3 | zf-CCCH | 37.9 | 3e-12 | 241 | 266 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC f + G+C++Gd+C+FaHg+
Rsa1.0_07148.1_g00005.1 241 WKTRLCGKFEK-GQCPFGDNCHFAHGQ 266
8**********.*************97 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-14 | 71 | 106 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.77E-8 | 72 | 104 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4E-4 | 73 | 99 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.436 | 73 | 100 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-4 | 74 | 99 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0036 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.2E-6 | 151 | 177 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.455 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.9E-8 | 153 | 177 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-8 | 238 | 269 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-14 | 238 | 269 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.9E-7 | 240 | 266 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.713 | 240 | 267 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.2E-10 | 241 | 266 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MDSSYSDSRP YVVWNQTQMV DSTNNELSES QTMPQLKRPR LAADDNNNTS WGMVPSSNPP 60
PPPPMNKGTA NIFYKTRMCV KFKSGACRNG ELCNFAHGME DLRQPPSNWQ EIVGPPVQDR 120
EKDRERERER ERLSSVSSAG DSNWEDDQKI ILRMKLCRKF CFGEECPYGD RCNFIHEDLS 180
KFREENGKLR ESLAISVVDP MSVENGVAAS HQVEVNRQGG IPVPAAPMIN GGGGGVKTVF 240
WKTRLCGKFE KGQCPFGDNC HFAHGQAELL QHSVGRVEGE AMNAVAAASV SKQTVVPANE 300
PFAMKPIAQV TADSSGLNDE GRRKKCLLKW SDSKKINRIY GDWIDDLPVG
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