PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 241aa MW: 26627.3 Da PI: 5.1745

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07135.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.2e-18	65	113	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Rsa1.0_07135.1_g00001.1 65 YRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 113 9**888.******854...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.578	64	121	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.9E-31	64	122	IPR001471	AP2/ERF domain
SMART	SM00380	5.3E-36	64	127	IPR001471	AP2/ERF domain
Pfam	PF00847	1.0E-12	64	113	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-21	65	121	IPR016177	DNA-binding domain
PRINTS	PR00367	1.1E-10	65	76	IPR001471	AP2/ERF domain
CDD	cd00018	4.45E-32	65	123	No hit	No description
PRINTS	PR00367	1.1E-10	87	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEKQINVGSN ATDHQEDNNA SVITTSTVAS SGSWSSKRSL LQDTEAGGKR RKSNGGSNNK 60 NPASYRGVRK RSWGKWVSEI REPKKKSRIW LGTYPTAEMA ARAHDVAALA IKGNSGYLNF 120 PELSGLLPRP VSCSPKDIQA AAAKAAEIIW QGSVIDEKLA NELSHSELST AQSSTSSSFV 180 FSSDTLDTLS TDKEINEERV FDLPDLFTEG FMNHNDSFRY YESTTTWQLY GEDVEFAWLD 240 D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-15	63	121	13	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07135.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444562.1	1e-179	PREDICTED: ethylene-responsive transcription factor ERF035-like
Swissprot	Q9M210	2e-94	ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBL	A0A3P6BEL8	1e-136	A0A3P6BEL8_BRACM; Uncharacterized protein
STRING	Bra003415.1-P	1e-136	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60490.1	3e-83	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]