![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_07010.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 142aa MW: 15575.3 Da PI: 10.2457 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.9 | 3.5e-15 | 32 | 114 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W+++ + +Liea ++ +l+rg+l++++W+ev++++ g ++ +qCk++++ l+k+yk +k+ ++ s++ +f+ Rsa1.0_07010.1_g00002.1 32 WSEDATATLIEAWGDRYVHLSRGNLRQNDWKEVADAVnsrhGGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS------SSWCFFE 111 *************************************9744445567799*****************998886......5799**9 PP trihelix 84 qle 86 +l+ Rsa1.0_07010.1_g00002.1 112 RLD 114 997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.2E-26 | 30 | 115 | No hit | No description |
SMART | SM00595 | 0.0013 | 39 | 121 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 142 aa Download sequence Send to blast |
METTPETQPK SQSQSGGGGS SHRVPPGRED WWSEDATATL IEAWGDRYVH LSRGNLRQND 60 WKEVADAVNS RHGGNGRPKT DVQCKNRIDT LKKKYKTEKA KPSSSSWCFF ERLDFLIGPA 120 AAKKSTAAGA FRSPVTKPAG SV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_07010.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489305.1 | 1e-102 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 1e-36 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A397ZGB4 | 2e-68 | A0A397ZGB4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F1C0 | 2e-68 | M4F1C0_BRARP; Uncharacterized protein | ||||
STRING | Bra034866.1-P | 3e-69 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11100.1 | 2e-56 | sequence-specific DNA binding transcription factors |