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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_06975.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
LBD |
Protein Properties |
Length: 149aa MW: 16852.7 Da PI: 9.1491 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_06975.1_g00002.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 126.8 | 1.1e-39 | 33 | 133 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+CaaCk+lrr+C+kdC+++pyfp ++p kfa++h+++Ga nv+k+l++lp ++r +a++sl +eA++r++dPvyG+vg+i+ lq q
Rsa1.0_06975.1_g00002.1 33 RCAACKYLRRRCPKDCIFSPYFPPSDPDKFACIHRIYGAGNVSKMLQQLPVQTRAEAVESLSFEAKCRVEDPVYGCVGIISLLQTQ 118
6************************************************************************************* PP
DUF260 87 leqlkaelallkeel 101
++++++ la++++++
Rsa1.0_06975.1_g00002.1 119 IQKTQTLLARTQAQI 133
*******99999875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 149 aa
Download sequence Send
to blast |
MVSCFNQAIE LSDVKFMQEK KLTEKKSVMN PKRCAACKYL RRRCPKDCIF SPYFPPSDPD 60 KFACIHRIYG AGNVSKMLQQ LPVQTRAEAV ESLSFEAKCR VEDPVYGCVG IISLLQTQIQ 120 KTQTLLARTQ AQIAVAQAKH SQTQISEFM
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB473847 | 1e-118 | AB473847.1 Arabidopsis thaliana ASL14 mRNA for ASYMMETRIC LEAVES2-like 14 protein, complete cds. |
GenBank | DQ056609 | 1e-118 | DQ056609.1 Arabidopsis thaliana putative LOB domain protein (At3g26620) mRNA, complete cds. |