PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06664.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 424aa    MW: 46983.2 Da    PI: 8.8687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06664.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05307329123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ Cgk+F++   L  H  +H
  Rsa1.0_06664.1_g00001.1 307 FTCETCGKVFKSYQALGGHRASH 329
                              89***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.40.104.6E-3517146IPR009009RlpA-like protein, double-psi beta-barrel domain
SuperFamilySSF506851.12E-3025146IPR009009RlpA-like protein, double-psi beta-barrel domain
PRINTSPR012254.8E-83045IPR007118Expansin/Lol pI
PRINTSPR012254.8E-84866IPR007118Expansin/Lol pI
PROSITE profilePS5084225.47549146IPR007112Expansin/pollen allergen, DPBB domain
PfamPF033303.7E-1568133IPR009009RlpA-like protein, double-psi beta-barrel domain
PRINTSPR008295.6E-56980IPR005795Major pollen allergen Lol pI
PRINTSPR012254.8E-87189IPR007118Expansin/Lol pI
PRINTSPR008295.6E-5106121IPR005795Major pollen allergen Lol pI
PRINTSPR008295.6E-5128143IPR005795Major pollen allergen Lol pI
SMARTSM00355160142164IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-4147164IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053307334IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-7307329No hitNo description
SMARTSM003550.02307329IPR015880Zinc finger, C2H2-like
PfamPF139127.5E-11307331IPR007087Zinc finger, C2H2
PROSITE patternPS000280309329IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-7356383No hitNo description
SMARTSM003550.23361383IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058361383IPR007087Zinc finger, C2H2
PfamPF139127.9E-12361383IPR007087Zinc finger, C2H2
PROSITE patternPS000280363383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019953Biological Processsexual reproduction
GO:0005576Cellular Componentextracellular region
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MALFSGKYFC FIVALFAISF KPCSCHNNTR WNSAGITWYG DREGPGSTGG ACGFGDAVAK  60
HPYQCMVSAG GPSLFKDGTG CGACYRLVCD HPLCNKRPIK VMISDECAGC TKEAFHFDLS  120
GKAFGALAKR GKGDELRNLG ELKVRFCLKS FVNGRALGGH MRSHVPSLHK FSIQEEEGER  180
ASQLNDETES DVSSSSSMMD PKVANESETE SSSSMKITNL TRKRSKRTRK LETSATKKRK  240
TSQLGYKTEP ECEPPYSSTS DTTRDEDLAF CLMLLSRDRW KNRTSSKEVV EEISTEGHNK  300
WSKKGRFTCE TCGKVFKSYQ ALGGHRASHK KNRVSNKTEQ RSETEFENVV VVVAAAEKRI  360
HECPICLRVF ASGQALGGHK RSHGIGNLSV DHHQVRVESV KQKRMIDLNL PAPTHEEEVS  420
IVFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2hcz_X4e-222814616135Beta-expansin 1a
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221239RKRSKRTRKLETSATKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06664.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6212880.0KC621288.1 Brassica rapa beta-expansin protein 5 (EXPB5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443593.10.0PREDICTED: zinc finger protein ZAT9-like, partial
SwissprotQ9M2021e-116ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A3P6FVQ51e-149A0A3P6FVQ5_BRAOL; Uncharacterized protein
STRINGBo6g077190.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-98C2H2-like zinc finger protein