PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06392.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 346aa    MW: 38818.1 Da    PI: 9.6942
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06392.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.1e-31280338360
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                              D y+WrKYGqK++kgs++pr+YY+C+s   Cp++k+ver+ edp ++++tYe eHnh+k
  Rsa1.0_06392.1_g00001.1 280 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrACPARKHVERCLEDPAMLIVTYEAEHNHPK 338
                              99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.7E-17230276IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-32266338IPR003657WRKY domain
PROSITE profilePS5081129.562273339IPR003657WRKY domain
SuperFamilySSF1182904.32E-26276338IPR003657WRKY domain
SMARTSM007742.3E-36278338IPR003657WRKY domain
PfamPF031066.1E-26280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEEIEGANRA AVESCHRVLN LLSCTPHQQD HVSLVSETTE AASRFERVTS LLSTSVGHAR  60
FRRAKKPQSH LSQSIFLDPV HQITEPPPSQ KEPVLLSGFH ELSTDSLTLG TRSFSLNSNA  120
KAPLLQLNQQ AMPYSNYPNM FPEHRQQQQL HERLQAHHHQ QQQKDQAEMM MMLRKCNGGI  180
SLSFDNSSCT QTMSSTRSFV SSLSIDGSVA NVEGMNSFQL VGVPSSQHSK RKCLMKGGEH  240
GSMKCGSSSR CHCSKKRKHR VRRSIRVPAI SNKVADIPPD DYSWRKYGQK PIKGSPYPRG  300
YYKCSSMRAC PARKHVERCL EDPAMLIVTY EAEHNHPKLP SQTVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20266341276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06392.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434233.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043360.0WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A3P5ZD760.0A0A3P5ZD76_BRACM; Uncharacterized protein
TrEMBLC4N0V90.0C4N0V9_BRANA; BnaA05g11870D protein
STRINGA0A087G0B90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-163WRKY DNA-binding protein 21