PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06286.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 476aa    MW: 53424.7 Da    PI: 5.0468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06286.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-14312358455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ Le A+ YIk+Lq
  Rsa1.0_06286.1_g00002.1 312 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLEDAISYIKELQ 358
                              799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-4746234IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.44E-18307367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.27E-16311362No hitNo description
PfamPF000104.9E-12312358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-18312367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-18314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNDLGWDEEE TSIANAVLGN SASDFLRTIS SSNQNLFLFT ETDDTLNKKL SSLVEWPNSE  60
NFSWNYSILW QQTVSRSGHQ VLGWGDGCCR EPNHSEESKL VSGLEEEEEM MRWQEMRRRV  120
LHKLQRVFGE SDEDNNYALS LENVTATETF FLASMYFFFN HGEGGPGRCF SEGRHVWWVS  180
DEVGYDYCFR SFMAKRAGIR TVVMVPTDAG VVELGSVWSL PENVELVRSV QGLFMRRVEP  240
SRVGGVHKLF GQELNSFDHN NKGYTSQGSD VKVQENANVV VAGGGGGACV VEEKRPKKRG  300
RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLEDA ISYIKELQEK  360
VKSIEAEGVR TVDSTEAVEI QAGEEEVVVR MISPLETHPA SRIIQAMRNS EVSVMESTLS  420
SAEDRVFHTF VVKSNNGSDP LTREKLIAAA GYPQSSLMQQ QQPLVPSHSS QVSGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28306381277Transcription factor MYC2
5gnj_B1e-28306381277Transcription factor MYC2
5gnj_E1e-28306381277Transcription factor MYC2
5gnj_F1e-28306381277Transcription factor MYC2
5gnj_G1e-28306381277Transcription factor MYC2
5gnj_I1e-28306381277Transcription factor MYC2
5gnj_M1e-28306381277Transcription factor MYC2
5gnj_N1e-28306381277Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293301KRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06286.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485202.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A0D3C6K30.0A0A0D3C6K3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CPJ80.0A0A3P6CPJ8_BRAOL; Uncharacterized protein
STRINGBo4g197150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-127ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]