PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05825.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 367aa    MW: 40535.2 Da    PI: 9.8784
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05825.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.41.5e-13288344560
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkkevaklk 60 
                              +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++Lk + +e +k +  +lk
  Rsa1.0_05825.1_g00001.1 288 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLKRKqAEIIKTQKNELK 344
                              79***************************************8651444555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-12284349IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.427286335IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.16E-9288334No hitNo description
PfamPF001703.6E-11288345IPR004827Basic-leucine zipper domain
CDDcd147072.51E-23288340No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-12288344No hitNo description
PROSITE patternPS000360291306IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGTHINFNNS GVYSSGGNGS DNNQSKPLGR QSSLYSLTFD EFQSTLGEPG KEFGSMNMDE  60
LLKNIWTAEE TTQPIMTTTT TSSVQQPSSG FAPGGGSLLQ RQGSLTLPRT LSQKTVDEVW  120
KHLMSKDNCT DAPERQQTLG EMTLEDFLLR AGVVKEDSQQ NQNSSSEFCA NNGVSTGLGF  180
GFGQPSQNNI SFNSNNSSMI LNQAPATMQQ QPHQQEHQRL PPTIYPKQAN VTFAAPVMGR  240
AGVTVAASSP GTTSSAENKD WSSPVVPYVF GRQGRRSNTG VVEKVVERRQ KRMIKNRESA  300
ARSRARKQAY TLELEAEIEN LKQLNQDLKR KQAEIIKTQK NELKESSKQR PWLAKTPCLR  360
RTLTGPW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00087SELEXTransfer from AT1G49720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05825.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1228920.0JX122892.1 Brassica napus ABA-responsive element binding factor 1 (ABF1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438120.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4
SwissprotQ9M7Q51e-173AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLA0A397YWE90.0A0A397YWE9_BRACM; Uncharacterized protein
STRINGBra018800.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.11e-122abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]