PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05743.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 392aa    MW: 45523.8 Da    PI: 5.1567
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05743.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031363382221
                              EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                              kC+ Cg+ F ++  L +Hi 
  Rsa1.0_05743.1_g00003.1 363 KCGRCGEKFESRTKLFKHIA 382
                              7*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.52E-7161194No hitNo description
PROSITE profilePS501579.349362391IPR007087Zinc finger, C2H2
PROSITE patternPS000280364386IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSGGTVPDLL PFFSTKVYSG YSDTWKGFYK VYSDVFNKVH LNEVNFARKL GLKMDSVREA  60
PAMGSLESPY AQVKDFYSYW KLKEENDKVR KKAKREYNES VRSLAAFVKK LDKRMVDMMV  120
MKRIEMEVKK VEERERKEKM DKERLERAMK QPDWGKGGGW KNFKTEKQWK NHEQSKKHKE  180
IVAELRVEVP ETETVEELQE NIQDGFNMDD DEAEEKDVEE EVLGEADETD DEYVIAEEDV  240
KKESSEDEDA NDDEMSLLKK MVSEQKNKLK NVVSREEDEV VVEKERTTKN AGDANKAELN  300
TDDNVKDEQD SVEYDNRKST GRRRRSKKGK DKNNFGGLME KSSEADDIGM TSEGTSKKAF  360
YNKCGRCGEK FESRTKLFKH IADTDHATVK SR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05743.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681551.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-124JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A0D3CWQ00.0A0A0D3CWQ0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6HAN70.0A0A3P6HAN7_BRAOL; Uncharacterized protein
STRINGBo6g087130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.13e-80DNAJ heat shock N-terminal domain-containing protein