PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05739.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 250aa    MW: 28789.6 Da    PI: 9.983
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05739.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.21.3e-1181117339
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                              ++k +rr+++NReAAr+sR+RKka++++Le+   +L 
  Rsa1.0_05739.1_g00004.1  81 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 117
                              6899**************************8655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-579142IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.77281123IPR004827Basic-leucine zipper domain
PfamPF001701.6E-881112IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.62E-783119No hitNo description
CDDcd147083.83E-2383134No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-785111No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
PfamPF141443.7E-29169243IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MNSASTHFVP TSRVGIYEPL HQFGMWGETF KNNIGNGGSM NTPNHILIPN NQKLDNTNLS  60
EDTSHGTPHM FDQEASTSRH PDKIQRRLAQ NREAARKSRL RKKAYVQQLE TSRLKLIQLE  120
QELDRARQQG FYVGNGIDTS SLGFSETMNP GIAAFEMEYG HWIEEQNKQI CELRTVLHGH  180
VTDVELRSQV ENAMKHYFEL FRMKSAAAKA DVFFVMSGMW RTSAERFFLW IGGFRPSDLL  240
KVIKIRKQRT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05739.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5320570.0FJ532057.1 Brassica rapa subsp. pekinensis TGA2 protein (TGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492457.10.0PREDICTED: transcription factor TGA1
RefseqXP_018492458.10.0PREDICTED: transcription factor TGA1
RefseqXP_018492459.10.0PREDICTED: transcription factor TGA1
SwissprotQ392371e-167TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A078F2R71e-175A0A078F2R7_BRANA; BnaA06g24140D protein
TrEMBLA0A3P5YWD41e-175A0A3P5YWD4_BRACM; Uncharacterized protein
TrEMBLE6Y8B71e-175E6Y8B7_BRARP; TGA2 protein
STRINGBra024366.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-169bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]