PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05688.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 345aa    MW: 39051.4 Da    PI: 6.8043
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05688.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.81.4e-3052151193
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk++ae++    + ++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  Rsa1.0_05688.1_g00001.1  52 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSTNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSF 137
                              89***************************955566889************************************************ PP

                              EE-.SS..SEE..E CS
                       B3  83 kld.gr..sefelv 93 
                              ++  g+  ++ +l+
  Rsa1.0_05688.1_g00001.1 138 QRGvGDeaQRSKLY 151
                              *5433313444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4145158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-2948140IPR015300DNA-binding pseudobarrel domain
CDDcd100176.45E-2650139No hitNo description
SMARTSM010191.2E-2352158IPR003340B3 DNA binding domain
PfamPF023626.7E-2852155IPR003340B3 DNA binding domain
PROSITE profilePS5086314.52252158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDLSLAPSSS DQEQDKDQEL ASNIGASTSS GTANNSNFPM MMIPPPEKEH MFDKVVTPSD  60
VGKLNRLVIP KQHAERYFPL DSTNNQNGTL LNFQDRNGKM WRFRYSYWNS SQSYVMTKGW  120
SRFVKEKKLD AGDIVSFQRG VGDEAQRSKL YIDWRHRPDM SLVQTHQFGN YGFNFNFPTT  180
SQYSNRFHPL PEYNSVPIHR SLNIGNHQRS YYNNQRQEFV GYGYGNLAYY TGSPLDQRSI  240
VGSEPLVIES VPVVPGRLPP VMLPPPLPPP PSTAGKRLRL FGVNMECGND YDQHEESLLV  300
RRGEMGASSS SSALRFNLPN DHDDDGDDDQ FAKKGKSSFS LDFSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-63461602116B3 domain-containing transcription factor NGA1
5os9_B2e-63461602116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05688.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073230.0AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965660.0AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankFJ8737330.0FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492258.10.0PREDICTED: B3 domain-containing transcription factor NGA3
SwissprotQ9MAN10.0NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A3P6CE490.0A0A3P6CE49_BRACM; Uncharacterized protein
STRINGBo5g002790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.10.0B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]