PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05544.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 270aa    MW: 30816.1 Da    PI: 4.4479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05544.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.2e-061531911255
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              R +++ +++  L++l+ +      +K + a++L +AveYIk Lq
  Rsa1.0_05544.1_g00002.1 153 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 191
                              677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.004141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-7151194No hitNo description
SMARTSM003536.6E-4152196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-10155197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTGEFEMVGT WWSSPINTNT SVFSGYSVPR PTESSLDITD FEWQNFDNKT NDHNDDFMNM  60
HNSFFEGLFD PNEQLLSDSW PKTTISTAKS ELLESFPFLD NMFLINSEAH DHIRDHKSER  120
TEELKETSDI YSPRLLKRSR IDTLSPLPSF KVRKEKLGDR ITALQQLVSP FGKTDTASVL  180
NEAVEYIKFL QEQVTVLVNP DHNTRESVQR QQCSDKEEEE ECNSRRHEDL ASRGLCLMPI  240
SASYPVAAAA ASAAEMNTYD FSNLTFAMNS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05544.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0154464e-82BT015446.1 Arabidopsis thaliana At4g05170 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022550631.11e-155transcription factor bHLH114-like
SwissprotQ9M0X81e-123BH114_ARATH; Transcription factor bHLH114
TrEMBLA0A397XVL31e-167A0A397XVL3_BRACM; Uncharacterized protein
STRINGBo9g076250.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.15e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]