PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05517.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 365aa    MW: 40525.2 Da    PI: 7.7036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05517.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12297342655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Rsa1.0_05517.1_g00002.1 297 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 342
                              689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-16294356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.07E-12295344No hitNo description
Gene3DG3DSA:4.10.280.105.5E-14296353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDSNTHNHLY DPNHIPPSGS GLLRFRSAPS SVLAAFVDDD NNKSGLGGSS SDRLLSRFAS  60
SNGSNEFEAK SPVSLTNTSV SYAASLPPPP QQQQPEPSGF LGLPPHYPRQ SKGMMNTIGL  120
DQFLNNHHTK PVESSLLRQS SSPAGMFTNL TAQNGYGSVR SLMDYVGEEE DQASPSSSNE  180
LRRHNSLSSR PPSSLGMLSQ IPEIAPESSF QYSHWNDPAS FIDNFSSLKR ETEDDDGKLF  240
QNGESGNRMQ LLSHHLSLPK SLSTASDMVS VDKYMQLQDS VPCKIRAKRG CATHPRSIAE  300
RVRRTKISER MRKLQELVPN MDKQTNTADM LDLAVDYIKD LQRQYKILNE NRANCKCMHK  360
EKNLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05517.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480230.10.0PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLM4DK580.0M4DK58_BRARP; Uncharacterized protein
STRINGBra016886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]