PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_05496.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 500aa MW: 56121.3 Da PI: 6.7633

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_05496.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.3	3.7e-29	224	283	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+H h+ Rsa1.0_05496.1_g00002.1 224 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHSHP 283 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-30	209	285	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-26	217	285	IPR003657	WRKY domain
PROSITE profile	PS50811	27.76	219	285	IPR003657	WRKY domain
SMART	SM00774	2.7E-34	224	284	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	225	283	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MEKEDFLRSG HGKEERTEEM RELDSHQEYD HIIRSKLDSI KVEMEEAKEE NRRLKASLSR 60 TKKEFEILQT KYNQLMVQHE DPNKFSPKGH HQHKEEDEAK ERTSEREELV LLSLGRRSKS 120 PVPSGSVTSK EKKMKDSMEE TDDDKKIDEQ RLSMGFEYRD LSNPSEKLEF DHREVSNSNK 180 IPSENSFGFK NDGDEHEDEE EPLPQNIAKK TRVSVRARCE TPTMNDGCQW RKYGQKIAKG 240 NPCPRAYYRC TIAPSCPVRK QVQRCSEDMS ILISTYEGTH SHPLPMSATA MASATSAAAS 300 MLLSGASSSS SAADLHGINF SLSSTPKPLL QTSSGHPTVT LDLTTSSSSQ QPFLSLLNKF 360 TAPPPSNVSR ANSYPSTNLN FSNNTNTLMN WGNRNEQYRA PYGNISTHQQ SPYQHMIQTR 420 AAGLSFDQFG RSSSSSPHPT PNSLDIKNIT HQVQSLPAET IKAITTDPRF QSALATALSS 480 IIGGDLKMDN MTRNEDEKSP

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MEKEDFLRSG HGKEERTEEM RELDSHQEYD HIIRSKLDSI KVEMEEAKEE NRRLKASLSR  60
TKKEFEILQT KYNQLMVQHE DPNKFSPKGH HQHKEEDEAK ERTSEREELV LLSLGRRSKS  120
PVPSGSVTSK EKKMKDSMEE TDDDKKIDEQ RLSMGFEYRD LSNPSEKLEF DHREVSNSNK  180
IPSENSFGFK NDGDEHEDEE EPLPQNIAKK TRVSVRARCE TPTMNDGCQW RKYGQKIAKG  240
NPCPRAYYRC TIAPSCPVRK QVQRCSEDMS ILISTYEGTH SHPLPMSATA MASATSAAAS  300
MLLSGASSSS SAADLHGINF SLSSTPKPLL QTSSGHPTVT LDLTTSSSSQ QPFLSLLNKF  360
TAPPPSNVSR ANSYPSTNLN FSNNTNTLMN WGNRNEQYRA PYGNISTHQQ SPYQHMIQTR  420
AAGLSFDQFG RSSSSSPHPT PNSLDIKNIT HQVQSLPAET IKAITTDPRF QSALATALSS  480
IIGGDLKMDN MTRNEDEKSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-20	211	285	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_05496.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430068	0.0	KF430068.1 Brassica rapa WRKY transcription factor 61 (WRKY61) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447659.1	0.0	PREDICTED: probable WRKY transcription factor 61
Refseq	XP_018449842.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A3P6G857	0.0	A0A3P6G857_BRAOL; Uncharacterized protein
STRING	Bo8g068160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	1e-177	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]