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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_05361.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29054 Da PI: 7.3024 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 104.1 | 7.4e-33 | 27 | 139 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 f+k ltpsdv+k++rlv+pk++ae++ +++e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk++ Rsa1.0_05361.1_g00003.1 27 FEKSLTPSDVGKLNRLVIPKQHAERYlplnnnggggddvtAESTEKGVLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSRYVKDK 112 99********************************999999777789**************************************** PP T--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 73 gLkegDfvvFkldgr.sefelvvkvfrk 99 +L++gD+v+F+++ r + +l+++++r+ Rsa1.0_05361.1_g00003.1 113 HLNAGDVVLFQRH-RfDIHRLFIGWRRR 139 ***********65.44888899999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-40 | 21 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.03E-31 | 23 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.92E-29 | 26 | 128 | No hit | No description |
Pfam | PF02362 | 4.9E-30 | 27 | 139 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.592 | 27 | 140 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-25 | 27 | 140 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSVNHSSRDI HHNTHSSLHN DHRESLFEKS LTPSDVGKLN RLVIPKQHAE RYLPLNNNGG 60 GGDDVTAEST EKGVLLSFED ESGKSWKFRY SYWNSSQSYV LTKGWSRYVK DKHLNAGDVV 120 LFQRHRFDIH RLFIGWRRRG EASSAVSTVS QDARGDTTAY WSGLTTPYRQ VHASTSSYPN 180 IHQEYSHYGA VAETPTVVAG SSRTVRLFGV NLECHGDVVE PPPCPDAYNG QHIYYYPTPH 240 PMSISFAGEA MEQVGDGRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-48 | 23 | 139 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-48 | 23 | 139 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_05361.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189547 | 0.0 | AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022575501.1 | 1e-165 | B3 domain-containing protein At3g11580-like | ||||
Swissprot | Q8RYD3 | 1e-141 | Y3158_ARATH; B3 domain-containing protein At3g11580 | ||||
TrEMBL | A0A397ZG79 | 1e-165 | A0A397ZG79_BRACM; Uncharacterized protein | ||||
STRING | Bra034828.1-P | 1e-161 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11580.1 | 1e-140 | B3 family protein |
Publications ? help Back to Top | |||
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