PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05346.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 328aa    MW: 37007.7 Da    PI: 5.8096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05346.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000365880123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C  Cgk+F++   L  H r H
  Rsa1.0_05346.1_g00001.1 58 HVCCECGKRFKSGKALGGHKRIH 80
                             79*****************9998 PP
2zf-C2H210.60.0017117137323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C  C+k F++   L  H+r H
  Rsa1.0_05346.1_g00001.1 117 CCVCHKKFTSMKALYGHMRFH 137
                              9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-55480IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.6E-65484No hitNo description
SMARTSM003550.155880IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-75880IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1575885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM003552.9115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954115137IPR007087Zinc finger, C2H2
PfamPF139120.0036117138IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
PfamPF139125.9E-5299315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
RPRFGSIKFK IPNSSQPFIS EQRREIEEDE GAKSLGFREE DEDDGAKSID LEGEEKKHVC  60
CECGKRFKSG KALGGHKRIH VVETRKFSTA RPKMVSSGAV AVGRSETTER DDFEVDCCVC  120
HKKFTSMKAL YGHMRFHPDR GWKGVLPPHH HHGDDHDGEF ITSDYDNDDD DYEDDDDENS  180
ELWDNHWGLD NVVDLKDSIK EGWAVTGKRG RRSAFKDPPS EDIDAKDLLF LATTAEAVDL  240
DAAETCDSRS VEEMMKRRRK KKKRLSEMEK ESSSSHHDHH QLEVSGAAEE GGGGAREKHV  300
CVTCNKSFAS YQALGVSSET PQNIHRTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254261MKRRRKKK
2255263KRRRKKKKR
3257263RRKKKKR
4258263RKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05346.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893785e-45AC189378.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455488.11e-179PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A078FXC91e-147A0A078FXC9_BRANA; BnaA10g10360D protein
STRINGBo9g123640.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-79C2H2 family protein