PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_05336.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 625aa MW: 69946.6 Da PI: 9.3677 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.9e-07 | 213 | 233 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++Cr+fa G C+ G +C+F+H Rsa1.0_05336.1_g00003.1 213 VPCRYFAL-GNCRNGTSCRFSH 233 69**9999.************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.742 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0017 | 210 | 235 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 212 | 234 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-4 | 214 | 234 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 625 aa Download sequence Send to blast |
MSVSGRKRVS KWDSKEEDLS GNDYPEQRQQ HARFYPEGKG RNGSSKRSAP DVDDDEHLKS 60 KQQHPGVAWP PRSSRGGDAA AMMGYYDSRK SSSEQDESRD RPRARRSGSR SNSRSRSPVQ 120 RVRRDAGGGS YDSRHKTRSG REVDGRYNRA GGDHDREPKN RKTRDTSYYK EEDSREQYPL 180 RVGGRSEDNN NNSRRETQRR DVSEREYNRI SNVPCRYFAL GNCRNGTSCR FSHHGARRSP 240 ERNPQDEMFG RHENNHRWNE RSDTGKSSEG AKGNNSNWID DMEMSPDWNY GVKTLKKPLN 300 GEKDSLAPSY EHGSAEVISQ QVGDRRSIGM FPSVGEKTVA SSHHGFSNNS APPIQAFSQV 360 QSALPYQNTP IAAGASQVLP PPPAAATHLP ENGNAVSREE LNHISNISAS LAQFFGNGQP 420 IPNLHSTLNP IQSMQLPQVY GQKEQSSHTQ TDILSIHTGV VPAVTALQIN NSDSLVSLAE 480 NPKPSSEENR DKRREEEAGK EPDGRKPGKE EETEKVVEEE EEEEDEDDGV GGENKKKEKD 540 PKGMRAFKFS LVEIVKELLK PAWKEGGMNK DAYKNIVKKV VDKVTGAIQT GNIPQTQEKI 600 DHYLSASKPK LTKLVQAYIS KVKKS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_05336.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC232490 | 3e-60 | AC232490.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049A09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490934.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1 | ||||
Refseq | XP_018490936.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1 | ||||
TrEMBL | D7KD69 | 0.0 | D7KD69_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_4187 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9160 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-17 | C3H family protein |