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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_05066.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 250aa MW: 28563.4 Da PI: 8.5628 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.5 | 1.5e-10 | 29 | 110 | 13 | 99 |
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ ++p +f++ ++ + +++ ++++sW++ l +++ +++++ W eFv++n L D++vF++++++ f v++ Rsa1.0_05066.1_g00003.1 29 KSKRIIPEEFLRGTcES---FEHRVVFSVPWNNSWQLWL--HPDKKGlFMIKEDWDEFVDDNFLGPDDTLVFTHQNTMYF--QVRI 107 35578999999877432...3346***************..6666666*************************8877888..8998 PP E-S CS B3 97 frk 99 f+k Rsa1.0_05066.1_g00003.1 108 FKK 110 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-13 | 13 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.73E-14 | 14 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-9 | 16 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.278 | 17 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-8 | 28 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.07E-10 | 28 | 109 | No hit | No description |
SuperFamily | SSF101936 | 1.18E-7 | 158 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-4 | 159 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.84 | 165 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.26 | 213 | 250 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSPERKMQEC LSKSSFSKSL SPGQNWKSKS KRIIPEEFLR GTCESFEHRV VFSVPWNNSW 60 QLWLHPDKKG LFMIKEDWDE FVDDNFLGPD DTLVFTHQNT MYFQVRIFKK DGKEIISAPL 120 GVEPKKETTS ASTSASGRTT TRGRKSCANV QNPERYLLNP QNPYCAKTVT KSNHLLYGLE 180 FGPRDSSMYF ILPDGKKVDG LTKYYSGSPS FLGWENVCQQ YNLKTGDTVV CEFELSGRVV 240 AGVRVHFVNE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_05066.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489812.1 | 1e-177 | PREDICTED: B3 domain-containing protein At5g25470-like | ||||
Swissprot | Q680D9 | 2e-93 | Y5475_ARATH; B3 domain-containing protein At5g25475 | ||||
TrEMBL | A0A398A3Q5 | 1e-162 | A0A398A3Q5_BRACM; Uncharacterized protein | ||||
STRING | Bo3g071320.1 | 1e-152 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4491 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25475.3 | 8e-81 | B3 family protein |