PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04677.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23351 Da    PI: 9.9691
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04677.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.3e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ien++ rqvtfskRr+g++KKA+ELSvLCd +va iifs++g+ly+++s
  Rsa1.0_04677.1_g00002.1  9 KKIENTTSRQVTFSKRRKGLFKKAHELSVLCDSQVAAIIFSQKGRLYDFAS 59
                             68***********************************************86 PP

2K-box67.25.4e-23851711197
                    K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                              e+  + l++++  + ++ie+L+  +R+l+G++L s+s+keLq++ +q+eksl  +Rs+K +l+ ++ie+l+ ke+el++e  +L+ 
  Rsa1.0_04677.1_g00002.1  85 EQYVQGLKNDMVTMVEKIEMLEVHNRKLMGQNLASCSVKELQEIATQIEKSLHIVRSRKAKLYEDEIEKLKAKERELKDERVRLSG 170
                              5667889999************999*******************************************************999876 PP

                    K-box  97 k 97 
                              +
  Rsa1.0_04677.1_g00002.1 171 R 171
                              5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.006161IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28323IPR002100Transcription factor, MADS-box
CDDcd002651.99E-38373No hitNo description
SuperFamilySSF554553.14E-30383IPR002100Transcription factor, MADS-box
PfamPF003199.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.88588178IPR002487Transcription factor, K-box
PfamPF014869.3E-2289170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVRGKIQIKK IENTTSRQVT FSKRRKGLFK KAHELSVLCD SQVAAIIFSQ KGRLYDFASS  60
DIQKTINRYA EYKREYFVAE SHPIEQYVQG LKNDMVTMVE KIEMLEVHNR KLMGQNLASC  120
SVKELQEIAT QIEKSLHIVR SRKAKLYEDE IEKLKAKERE LKDERVRLSG RVGEIPMGTP  180
SSSKEKEDVE TDLVIGYPKS RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-20172172Myocyte-specific enhancer factor 2B
1tqe_Q3e-20172172Myocyte-specific enhancer factor 2B
1tqe_R3e-20172172Myocyte-specific enhancer factor 2B
1tqe_S3e-20172172Myocyte-specific enhancer factor 2B
5f28_A4e-20172172MEF2C
5f28_B4e-20172172MEF2C
5f28_C4e-20172172MEF2C
5f28_D4e-20172172MEF2C
6c9l_A3e-20172172Myocyte-specific enhancer factor 2B
6c9l_B3e-20172172Myocyte-specific enhancer factor 2B
6c9l_C3e-20172172Myocyte-specific enhancer factor 2B
6c9l_D3e-20172172Myocyte-specific enhancer factor 2B
6c9l_E3e-20172172Myocyte-specific enhancer factor 2B
6c9l_F3e-20172172Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04677.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454348.11e-147PREDICTED: MADS-box protein AGL72
RefseqXP_018454349.11e-147PREDICTED: MADS-box protein AGL72
SwissprotQ9FLH51e-121AGL72_ARATH; MADS-box protein AGL72
TrEMBLM4EHL71e-136M4EHL7_BRARP; Uncharacterized protein
STRINGBra028282.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.21e-126MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]