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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_04677.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MIKC_MADS |
Protein Properties |
Length: 202aa MW: 23351 Da PI: 9.9691 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_04677.1_g00002.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 88.2 | 4.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien++ rqvtfskRr+g++KKA+ELSvLCd +va iifs++g+ly+++s
Rsa1.0_04677.1_g00002.1 9 KKIENTTSRQVTFSKRRKGLFKKAHELSVLCDSQVAAIIFSQKGRLYDFAS 59
68***********************************************86 PP
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2 | K-box | 67.2 | 5.4e-23 | 85 | 171 | 11 | 97 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
e+ + l++++ + ++ie+L+ +R+l+G++L s+s+keLq++ +q+eksl +Rs+K +l+ ++ie+l+ ke+el++e +L+
Rsa1.0_04677.1_g00002.1 85 EQYVQGLKNDMVTMVEKIEMLEVHNRKLMGQNLASCSVKELQEIATQIEKSLHIVRSRKAKLYEDEIEKLKAKERELKDERVRLSG 170
5667889999************999*******************************************************999876 PP
K-box 97 k 97
+
Rsa1.0_04677.1_g00002.1 171 R 171
5 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009909 | Biological Process | regulation of flower development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MVRGKIQIKK IENTTSRQVT FSKRRKGLFK KAHELSVLCD SQVAAIIFSQ KGRLYDFASS 60 DIQKTINRYA EYKREYFVAE SHPIEQYVQG LKNDMVTMVE KIEMLEVHNR KLMGQNLASC 120 SVKELQEIAT QIEKSLHIVR SRKAKLYEDE IEKLKAKERE LKDERVRLSG RVGEIPMGTP 180 SSSKEKEDVE TDLVIGYPKS RP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
5f28_A | 4e-20 | 1 | 72 | 1 | 72 | MEF2C |
5f28_B | 4e-20 | 1 | 72 | 1 | 72 | MEF2C |
5f28_C | 4e-20 | 1 | 72 | 1 | 72 | MEF2C |
5f28_D | 4e-20 | 1 | 72 | 1 | 72 | MEF2C |
6c9l_A | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-20 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |