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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04673.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 244aa MW: 28903.3 Da PI: 9.264 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54.9 | 2.4e-17 | 74 | 159 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 +W+ ++v ++i+a ++++++ + ++k+ W++v+k++ e+g+++sp+q k+k+++ n+rykk++e+ ++ t +++ +++++++++ Rsa1.0_04673.1_g00003.1 74 KWMVKMVELMITALSYLGDNDHKH-ARKGNWRSVAKVIDEGGYHVSPQQYKDKFNDHNNRYKKLNEMIGRVTcCDVIENHALLHKI 158 7***************99886665.8999*****************************************9758899999999998 PP trihelix 86 e 86 + Rsa1.0_04673.1_g00003.1 159 D 159 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-12 | 73 | 185 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MRYLSPNVMD RRQHHLISPR DLSLPFTMMI PSVHHNFPVT EYKNGQRWTS EEDYGDGHNE 60 SDKSKKCCPR KLVKWMVKMV ELMITALSYL GDNDHKHARK GNWRSVAKVI DEGGYHVSPQ 120 QYKDKFNDHN NRYKKLNEMI GRVTCCDVIE NHALLHKIDY LDEKEKDEDR KLVRSKHLFY 180 EEMCSYLNEN MLHLPHDPAL HPPLALRCHD NDERRNAKMK ILIVVMTVRN KTYLKRIVGK 240 AMVH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04673.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104656.1 | 6e-95 | PREDICTED: uncharacterized protein LOC103830595 | ||||
Refseq | XP_013648723.1 | 6e-95 | uncharacterized protein BNAA07G21220D | ||||
TrEMBL | A0A397YV49 | 1e-93 | A0A397YV49_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CHM1 | 1e-93 | M4CHM1_BRARP; Uncharacterized protein | ||||
STRING | Bra003704.1-P | 2e-94 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76870.1 | 1e-58 |