PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04643.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 312aa    MW: 35636.5 Da    PI: 7.7593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04643.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147194123
                             EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                             y C+ C+++F  ++ L+ H r  H
  Rsa1.0_04643.1_g00001.1 71 YFCGVCDRRFYANEKLVAHFRQiH 94
                             78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.3E-63295IPR029060PIN domain-like
PfamPF019369.8E-936224IPR021139NYN domain, limkain-b1-type
SuperFamilySSF576679.38E-57096No hitNo description
PROSITE profilePS5015711.1777199IPR007087Zinc finger, C2H2
PROSITE patternPS0002807394IPR007087Zinc finger, C2H2
CDDcd061677.21E-10137223No hitNo description
Gene3DG3DSA:3.40.50.10102.3E-6146226IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MFSRFVQRIR ISKTQITSLY STKSFTTLIN PKPPTRVAVF WDLDNKPPAS HPPHDAAVKL  60
RTAASSFGSP YFCGVCDRRF YANEKLVAHF RQIHEAENQK RVRQIESAKG GQRVRLVAKY  120
SMKMDKYKRA ARNLLIPKEG YGLAEELTRG GFRVKMVSDK PEAADRALKE HMVDVMDKRE  180
AECLVLVSDD SGFVDVLWEA KDRCLRTVVI GDLSEGKLKR VADVAYSWKE VVMGKAKKEV  240
EKVVGKWRDR DVLKKLEWSY DPVLDKERGL SCCGDWDYGF DSEDDDEVEM GDGGDWWEMD  300
DEDSVGSSRS CQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04643.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472541.10.0PREDICTED: uncharacterized protein LOC108843889
TrEMBLA0A078G7880.0A0A078G788_BRANA; BnaC03g29480D protein
STRINGBo3g045630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-138C2H2 family protein